When an overhead door or gate has manual controls (usually with an UP, DOWN, and STOP button), we normally recommend that the customer hire an overhead door company to modify the door controls before connecting to an access control system. Typically, the controls are modified to accept a momentary input to open the door, and then to automatically close the door after a designated time period. Like anything else, these door control systems can be more complicated than they look, so its best to get someone knowledgeable of the product to make the modifications.
Keep in mind that anytime you make a door or gate auto-closing, you also have to have the proper safety mechanisms in place. So if the door doesn't have them already, you may need to add a safety beam and/or safe edge on the door so that it reverses when someone or something is in the path of the door when it closes.